Mock Version: 1.2.6 Mock Version: 1.2.6 ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/f22-build-2987212-457181/root'shell=FalseprintOutput=Falseenv={'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}gid=425user='mockbuild'timeout=86400logger=uid=1000) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} and shell False warning: Could not canonicalize hostname: buildhw-09.phx2.fedoraproject.org Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/libsbml-5.11.0-10.fc22.src.rpm Child return code was: 0 LEAVE do --> ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec '], chrootPath='/var/lib/mock/f22-build-2987212-457181/root'shell=FalseprintOutput=Falseenv={'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}gid=425user='mockbuild'timeout=86400logger=uid=1000) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec '] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Vkfdse + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libSBML-5.11.0-Source + /usr/bin/gzip -dc /builddir/build/SOURCES/libSBML-5.11.0-core-plus-packages-src.tar.gz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd libSBML-5.11.0-Source + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/cat /builddir/build/SOURCES/libsbml-trim-pc-file.patch + /usr/bin/patch -p1 -s + /usr/bin/cat /builddir/build/SOURCES/libsbml-use-system-minizip-cmake.patch + /usr/bin/patch -p1 -s + /usr/bin/cat /builddir/build/SOURCES/libsbml_csharp-unexpected_symbol_error.patch + /usr/bin/patch -p1 -s + /usr/bin/cat /builddir/build/SOURCES/libsbml-fix_install_libpaths.patch + /usr/bin/patch -p1 -s + /usr/bin/cat /builddir/build/SOURCES/libsbml-arm-fix.patch + /usr/bin/patch -p1 -s + /usr/bin/cat /builddir/build/SOURCES/libsbml-mark-arguments-to-easily-distinguish-the-ones-to-be-.patch + /usr/bin/patch -p1 -s + /usr/bin/cat /builddir/build/SOURCES/libsbml-these-typemaps-do-not-apply-to-java-C.patch + /usr/bin/patch -p1 -s + sed -i -r 's/DOXYGEN_MAX_VERSION=1\.8\.8/DOXYGEN_MAX_VERSION=1.8.9/' configure + unzip -n /builddir/build/SOURCES/render-5.11.0-beta-1.zip Archive: /builddir/build/SOURCES/render-5.11.0-beta-1.zip inflating: render-package.cmake inflating: src/bindings/csharp/local-downcast-extension-render.i inflating: src/bindings/csharp/local-downcast-namespaces-render.i inflating: src/bindings/csharp/local-packages-render.i inflating: src/bindings/java/local-downcast-extension-render.i inflating: src/bindings/java/local-downcast-namespaces-render.i inflating: src/bindings/java/local-packages-render.i inflating: src/bindings/javascript/local-downcast-extension-render.cpp inflating: src/bindings/javascript/local-downcast-namespaces-render.cpp inflating: src/bindings/javascript/local-downcast-packages-render.cpp inflating: src/bindings/javascript/local-downcast-plugins-render.cpp inflating: src/bindings/javascript/local-render.i inflating: src/bindings/perl/local-downcast-extension-render.cpp inflating: src/bindings/perl/local-downcast-namespaces-render.cpp inflating: src/bindings/perl/local-downcast-packages-render.cpp inflating: src/bindings/perl/local-downcast-plugins-render.cpp inflating: src/bindings/perl/local-render.i inflating: src/bindings/python/local-downcast-extension-render.cpp inflating: src/bindings/python/local-downcast-namespaces-render.cpp inflating: src/bindings/python/local-downcast-packages-render.cpp inflating: src/bindings/python/local-downcast-plugins-render.cpp inflating: src/bindings/python/local-render.i inflating: src/bindings/r/local-downcast-extension-render.cpp inflating: src/bindings/r/local-downcast-namespaces-render.cpp inflating: src/bindings/r/local-downcast-packages-render.cpp inflating: src/bindings/r/local-downcast-plugins-render.cpp inflating: src/bindings/r/local-render.i inflating: src/bindings/ruby/local-downcast-extension-render.cpp inflating: src/bindings/ruby/local-downcast-namespaces-render.cpp inflating: src/bindings/ruby/local-downcast-packages-render.cpp inflating: src/bindings/ruby/local-downcast-plugins-render.cpp inflating: src/bindings/ruby/local-render.i inflating: src/bindings/swig/render-package.h inflating: src/bindings/swig/render-package.i inflating: src/render-package.cmake creating: src/sbml/packages/render/ creating: src/sbml/packages/render/common/ inflating: src/sbml/packages/render/common/RenderExtensionTypes.h inflating: src/sbml/packages/render/common/renderfwd.h creating: src/sbml/packages/render/extension/ inflating: src/sbml/packages/render/extension/RenderExtension.cpp inflating: src/sbml/packages/render/extension/RenderExtension.h inflating: src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp inflating: src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.h inflating: src/sbml/packages/render/extension/RenderLayoutPlugin.cpp inflating: src/sbml/packages/render/extension/RenderLayoutPlugin.h inflating: src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp inflating: src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.h inflating: src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp inflating: src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.h creating: src/sbml/packages/render/sbml/ inflating: src/sbml/packages/render/sbml/ColorDefinition.cpp inflating: src/sbml/packages/render/sbml/ColorDefinition.h inflating: src/sbml/packages/render/sbml/Ellipse.cpp inflating: src/sbml/packages/render/sbml/Ellipse.h inflating: src/sbml/packages/render/sbml/GlobalRenderInformation.cpp inflating: src/sbml/packages/render/sbml/GlobalRenderInformation.h inflating: src/sbml/packages/render/sbml/GlobalStyle.cpp inflating: src/sbml/packages/render/sbml/GlobalStyle.h inflating: src/sbml/packages/render/sbml/GradientBase.cpp inflating: src/sbml/packages/render/sbml/GradientBase.h inflating: src/sbml/packages/render/sbml/GradientStop.cpp inflating: src/sbml/packages/render/sbml/GradientStop.h inflating: src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp inflating: src/sbml/packages/render/sbml/GraphicalPrimitive1D.h inflating: src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp inflating: src/sbml/packages/render/sbml/GraphicalPrimitive2D.h inflating: src/sbml/packages/render/sbml/Image.cpp inflating: src/sbml/packages/render/sbml/Image.h inflating: src/sbml/packages/render/sbml/LinearGradient.cpp inflating: src/sbml/packages/render/sbml/LinearGradient.h inflating: src/sbml/packages/render/sbml/LineEnding.cpp inflating: src/sbml/packages/render/sbml/LineEnding.h inflating: src/sbml/packages/render/sbml/ListOfCurveElements.cpp inflating: src/sbml/packages/render/sbml/ListOfCurveElements.h inflating: src/sbml/packages/render/sbml/LocalRenderInformation.cpp inflating: src/sbml/packages/render/sbml/LocalRenderInformation.h inflating: src/sbml/packages/render/sbml/LocalStyle.cpp inflating: src/sbml/packages/render/sbml/LocalStyle.h inflating: src/sbml/packages/render/sbml/Polygon.cpp inflating: src/sbml/packages/render/sbml/Polygon.h inflating: src/sbml/packages/render/sbml/RadialGradient.cpp inflating: src/sbml/packages/render/sbml/RadialGradient.h inflating: src/sbml/packages/render/sbml/Rectangle.cpp inflating: src/sbml/packages/render/sbml/Rectangle.h inflating: src/sbml/packages/render/sbml/RelAbsVector.cpp inflating: src/sbml/packages/render/sbml/RelAbsVector.h inflating: src/sbml/packages/render/sbml/RenderCubicBezier.cpp inflating: src/sbml/packages/render/sbml/RenderCubicBezier.h inflating: src/sbml/packages/render/sbml/RenderCurve.cpp inflating: src/sbml/packages/render/sbml/RenderCurve.h inflating: src/sbml/packages/render/sbml/RenderGroup.cpp inflating: src/sbml/packages/render/sbml/RenderGroup.h inflating: src/sbml/packages/render/sbml/RenderInformationBase.cpp inflating: src/sbml/packages/render/sbml/RenderInformationBase.h inflating: src/sbml/packages/render/sbml/RenderPoint.cpp inflating: src/sbml/packages/render/sbml/RenderPoint.h inflating: src/sbml/packages/render/sbml/Style.cpp inflating: src/sbml/packages/render/sbml/Style.h creating: src/sbml/packages/render/sbml/test/ inflating: src/sbml/packages/render/sbml/test/CMakeLists.txt creating: src/sbml/packages/render/sbml/test/test-data/ inflating: src/sbml/packages/render/sbml/test/test-data/FutileCycle.xml inflating: src/sbml/packages/render/sbml/test/TestColorDefinition.cpp inflating: src/sbml/packages/render/sbml/test/TestEllipse.cpp inflating: src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp inflating: src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp inflating: src/sbml/packages/render/sbml/test/TestGradientBase.cpp inflating: src/sbml/packages/render/sbml/test/TestGradientStop.cpp inflating: src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp inflating: src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp inflating: src/sbml/packages/render/sbml/test/TestGroup.cpp inflating: src/sbml/packages/render/sbml/test/TestImage.cpp inflating: src/sbml/packages/render/sbml/test/TestLinearGradient.cpp inflating: src/sbml/packages/render/sbml/test/TestLineEnding.cpp inflating: src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp inflating: src/sbml/packages/render/sbml/test/TestLocalStyle.cpp inflating: src/sbml/packages/render/sbml/test/TestPolygon.cpp inflating: src/sbml/packages/render/sbml/test/TestRadialGradient.cpp inflating: src/sbml/packages/render/sbml/test/TestRectangle.cpp inflating: src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderCurve.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderExtension.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderPoint.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderReading.cpp inflating: src/sbml/packages/render/sbml/test/TestRenderWriting.cpp inflating: src/sbml/packages/render/sbml/test/TestRunner.c inflating: src/sbml/packages/render/sbml/test/TestStyle.cpp inflating: src/sbml/packages/render/sbml/test/TestText.cpp inflating: src/sbml/packages/render/sbml/test/TestTransformation.cpp inflating: src/sbml/packages/render/sbml/test/TestTransformation2D.cpp inflating: src/sbml/packages/render/sbml/Text.cpp inflating: src/sbml/packages/render/sbml/Text.h inflating: src/sbml/packages/render/sbml/Transformation.cpp inflating: src/sbml/packages/render/sbml/Transformation.h inflating: src/sbml/packages/render/sbml/Transformation2D.cpp inflating: src/sbml/packages/render/sbml/Transformation2D.h creating: src/sbml/packages/render/util/ inflating: src/sbml/packages/render/util/RenderLayoutConverter.cpp inflating: src/sbml/packages/render/util/RenderLayoutConverter.h inflating: src/sbml/packages/render/util/RenderUtilities.cpp inflating: src/sbml/packages/render/util/RenderUtilities.h extracting: src/sbml/packages/render-register.cxx inflating: src/sbml/packages/render-register.h creating: examples/c++/render/ inflating: examples/c++/render/addRenderInformation.cpp inflating: examples/c++/render/CMakeLists.txt inflating: examples/c++/render/convertLayout.cpp inflating: examples/c++/render/oldCMakeLists.txt inflating: examples/c++/render/printRenderInformation.cpp inflating: examples/c++/render/removeRenderInformation.cpp creating: examples/java/render/ inflating: examples/java/render/addRenderInformation.java inflating: examples/java/render/CMakeLists.txt inflating: examples/java/render/printRenderInformation.java inflating: examples/java/render/removeRenderInformation.java creating: examples/python/render/ inflating: examples/python/render/addRenderInformation.py inflating: examples/python/render/printRenderInformation.py inflating: examples/python/render/removeRenderInformation.py inflating: examples/render-package.cmake creating: examples/sample-models/render/ inflating: examples/sample-models/render/simple-L2-layout.xml inflating: examples/sample-models/render/simple-L2-render-global.xml inflating: examples/sample-models/render/simple-L2-render-local.xml inflating: examples/sample-models/render/simple-L2.xml + iconv -f latin1 -t utf8 NEWS.txt + touch -r NEWS.txt t + mv t NEWS.txt + sed -i -r 's|(#!/usr/bin/env python) +#.*|#!/usr/bin/python2|' docs/src/filters/doc-filter-python.py + rm -v src/sbml/compress/crypt.h src/sbml/compress/ioapi.c src/sbml/compress/ioapi.h src/sbml/compress/iowin32.c src/sbml/compress/iowin32.h src/sbml/compress/unzip.c src/sbml/compress/unzip.h src/sbml/compress/zip.c src/sbml/compress/zip.h removed 'src/sbml/compress/crypt.h' removed 'src/sbml/compress/ioapi.c' removed 'src/sbml/compress/ioapi.h' removed 'src/sbml/compress/iowin32.c' removed 'src/sbml/compress/iowin32.h' removed 'src/sbml/compress/unzip.c' removed 'src/sbml/compress/unzip.h' removed 'src/sbml/compress/zip.c' removed 'src/sbml/compress/zip.h' + grep -e 'This file was automatically generated by SWIG' -r . -l + xargs rm + mkdir build-docs ++ /bin/ls -1 ++ grep -v build-docs + cp -a AUTHORS.txt CMakeLists.txt COPYING.html COPYING.txt FUNDING.txt LICENSE.html LICENSE.txt Makefile.in NEWS.txt OLD_NEWS.txt README-extension.txt README.txt VERSION.txt VERSION_PACKAGES.ac acinclude.m4 aclocal.m4 cmake_uninstall.cmake.in common.cmake comp-package.cmake config configure configure.ac docs examples fbc-package.cmake layout-package.cmake libsbml.spec.in macosx qual-package.cmake render-package.cmake src build-docs/ + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.awOoRv + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.11.0-Source + mkdir build2 build ~/build/BUILD/libSBML-5.11.0-Source/build2 ~/build/BUILD/libSBML-5.11.0-Source + pushd build2 + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed' + export LDFLAGS ++ pkg-config --cflags python2 ++ sed s/-I// ++ pkg-config --libs python2 + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DWITH_PYTHON=ON -DWITH_CHECK=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python2.7 -DPYTHON_LIBRARY:FILEPATH=-lpython2.7 -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -Wno-dev .. -- The C compiler identification is GNU 5.0.0 -- The CXX compiler identification is GNU 5.0.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "3.0.5") -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") -- checking for module 'minizip' -- found minizip, version 1.2.8 -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found PythonLibs: -lpython2.7 (found version "2.7.9") -- Found PythonInterp: /usr/bin/python2 (found version "2.7.9") -- ---------------------------------------------------------------------- libSBML version 5.11.0 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/Software/libsbml/issue-tracker To contact the developers directly, email libsbml-team@caltech.edu Configured on host '' host type = Linux host operating system = Linux 3.17.8-300.fc21.x86_64 host CPU architecture = x86_64 General build flags: CC = /usr/bin/cc CXX = /usr/bin/c++ CPPFLAGS = -DLINUX CFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,--as-needed XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib64/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig (Version 3.0.5) -- Using Python = /usr/bin/python2 -- Using libcheck = /usr/lib64/libcheck.so -- Using C++ namespace ('libsbml') = no -- -- Support for SBML Level 3 Packages: -- SBML 'fbc' package = ON -- SBML 'layout' package = ON -- SBML 'comp' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libSBML-5.11.0-Source/build2 + make -j16 /usr/bin/cmake -H/builddir/build/BUILD/libSBML-5.11.0-Source -B/builddir/build/BUILD/libSBML-5.11.0-Source/build2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.11.0-Source /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.11.0-Source/build2 /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 0%] [ 0%] [ 0%] [ 0%] make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.11.0-Source /builddir/build/BUILD/libSBML-5.11.0-Source/src /builddir/build/BUILD/libSBML-5.11.0-Source/build2 /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/CMakeFiles/sbml-static.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.11.0-Source /builddir/build/BUILD/libSBML-5.11.0-Source/src /builddir/build/BUILD/libSBML-5.11.0-Source/build2 /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/CMakeFiles/sbml.dir/DependInfo.cmake --color= Swig Python source Swig Python source Swig Python source Swig Python source cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python && /usr/bin/python2 /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.11.0-Source --master /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/pydoc-doxygen.i --define USE_FBC --define USE_LAYOUT --define USE_COMP --define USE_QUAL --define USE_RENDER --define USE_FBC --define USE_COMP --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python && /usr/bin/python2 /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.11.0-Source --master /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/pydoc-doxygen.i --define USE_FBC --define USE_LAYOUT --define USE_COMP --define USE_QUAL --define USE_RENDER --define USE_FBC --define USE_COMP --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python && /usr/bin/python2 /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.11.0-Source --master /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/pydoc-doxygen.i --define USE_FBC --define USE_LAYOUT --define USE_COMP --define USE_QUAL --define USE_RENDER --define USE_FBC --define USE_COMP --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python && /usr/bin/python2 /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.11.0-Source --master /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/pydoc-doxygen.i --define USE_FBC --define USE_LAYOUT --define USE_COMP --define USE_QUAL --define USE_RENDER --define USE_FBC --define USE_COMP --define USE_QUAL --define USE_RENDER Scanning dependencies of target sbml-static Scanning dependencies of target sbml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 1 /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 0%] [ 0%] [ 0%] [ 0%] [ 0%] [ 0%] [ 1%] [ 1%] [ 1%] [ 1%] make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' [ 1%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp [ 1%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml/Association.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o [ 2%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml 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-DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 3 [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 3%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o [ 3%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src 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/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common 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src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python && /usr/bin/python2 /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/generate-class-name-list.py /builddir/build/BUILD/libSBML-5.11.0-Source/src > /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/class-list.txt Traceback (most recent call last): File "/builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/swigdoc.py", line 1834, in main(sys.argv) File "/builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/swigdoc.py", line 1812, in main tmpstream = open(tmpfilename, 'r') IOError: [Errno 2] No such file or directory: '/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/pydoc-doxygen.i.tmp' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make:109: recipe for target 'src/bindings/python/libsbml_wrap.cpp' failed make[2]: *** [src/bindings/python/libsbml_wrap.cpp] Error 1 make[2]: *** Waiting for unfinished jobs.... /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 7%] [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp Traceback (most recent call last): File "/builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/swigdoc.py", line 1834, in main(sys.argv) File "/builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/swigdoc.py", line 1830, in main os.remove(tmpfilename) OSError: [Errno 2] No such file or directory: '/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/pydoc-doxygen.i.tmp' src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make:109: recipe for target 'src/bindings/python/libsbml-converters.txt' failed /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 7 make[2]: *** [src/bindings/python/libsbml-converters.txt] Error 1 [ 8%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o Traceback (most recent call last): File "/builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/swigdoc.py", line 1834, in main(sys.argv) File "/builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/swigdoc.py", line 1812, in main tmpstream = open(tmpfilename, 'r') IOError: [Errno 2] No such file or directory: '/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/pydoc-doxygen.i.tmp' cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp [ 8%] src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make:109: recipe for target 'src/bindings/python/class-list.txt' failed make[2]: *** [src/bindings/python/class-list.txt] Error 1 /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/CompValidator.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 8%] [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common 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-DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python && /usr/bin/python2 /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/generate-converters-list.py /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/class-list.txt > /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/libsbml-converters.txt /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python && /usr/bin/python2 /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py -f /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/pydoc-doxygen.i -o /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/pydoc-normal.i -i /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../../../docs/src/common-text -g /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../../../docs/src/common-graphics /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 9%] [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util 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CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 9%] [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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--param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 10%] [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common 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-Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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-grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension 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-grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension 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-o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common 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&& /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util 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-DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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-o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 13%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC 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-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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--param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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--param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/Date.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/RDFAnnotationParser.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/CVTerm.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python && /usr/bin/cmake -E rename pydoc-doxygen.i pydoc.i cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/include -DGENERATING_DOCS -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_FBC -DUSE_LAYOUT -DUSE_COMP -DUSE_QUAL -DUSE_RENDER -DUSE_FBC -DUSE_COMP -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.11.0-Source/src/bindings/python/libsbml.i /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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/usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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-fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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-o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/SBMLExtensionException.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/ASTBasePlugin.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o [ 20%] [ 20%] [ 20%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o Building CXX object src/CMakeFiles/sbml.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/SBMLDocumentPlugin.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator 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-o CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/SBMLConvert.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src 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cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 18 [ 20%] [ 21%] [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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src/CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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-o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/util/PrefixTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/util/PrefixTransformer.cpp [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdentifierTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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-o CMakeFiles/sbml.dir/sbml/util/IdentifierTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/util/IdentifierTransformer.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 26%] [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/List.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common 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-DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdList.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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-o CMakeFiles/sbml.dir/sbml/util/IdList.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/util/IdList.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 27%] Building C object src/CMakeFiles/sbml.dir/sbml/util/util.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src 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-o CMakeFiles/sbml.dir/sbml/util/Stack.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/util/Stack.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 28%] [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src 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/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/validator/ConsistencyValidator.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/OverdeterminedValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common 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-fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml.dir/sbml/math/ASTPiecewiseFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/ASTPiecewiseFunctionNode.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTLambdaFunctionNode.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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-o CMakeFiles/sbml.dir/sbml/math/ASTLambdaFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/ASTLambdaFunctionNode.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 38%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp Building CXX object src/CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC 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-o CMakeFiles/sbml.dir/sbml/math/ASTCSymbolAvogadroNode.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/ASTCSymbolAvogadroNode.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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--param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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-o CMakeFiles/sbml.dir/sbml/math/FormulaParser.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/FormulaParser.c [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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-fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o [ 49%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/common/libsbml-version.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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-o CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/common/operationReturnValues.cpp Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 50%] [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/SBMLStripPackageConverter.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/SBMLIdConverter.cpp [ 50%] [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/SBMLUnitsConverter.cpp Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 50%] [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util 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CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.cpp Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 51 [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/SBMLConverterRegistry.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 51%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.cpp [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG 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-o CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/ConversionOption.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src 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-o CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/SBasePlugin.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 52%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src 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-c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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object src/CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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--param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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object src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/util/PrefixTransformer.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdentifierTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml 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/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/util/IdentifierTransformer.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 57%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdFilter.cpp.o [ 57%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src 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src/CMakeFiles/sbml-static.dir/sbml/util/List.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension 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object src/CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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--param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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-o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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-o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util 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-DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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-o CMakeFiles/sbml-static.dir/sbml/math/ASTFunctionBase.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/ASTFunctionBase.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTConstantNumberNode.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src 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-o CMakeFiles/sbml-static.dir/sbml/math/ASTUnaryFunctionNode.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/ASTUnaryFunctionNode.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 67%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTCnRationalNode.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/L3FormulaFormatter.c Building C object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/FormulaParser.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 68%] [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/compress/CompressCommon.cpp Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/InputDecompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/compress/InputDecompressor.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/compress/InputDecompressor.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/OutputCompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/sbml-static.dir/sbml/compress/OutputCompressor.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/compress/OutputCompressor.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 68%] [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/bzfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/xml/XMLLogOverride.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 69%] [ 69%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLFileBuffer.cpp.o Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src 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-DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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--param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Scanning dependencies of target test_layout_validator [ 70%] [ 70%] make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build [ 70%] make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/test/TestValidator.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/test/TestValidator.cpp [ 70%] Scanning dependencies of target test_sbml_package_fbc Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/test/TestValidator.cpp make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/validator/test/TestValidator.cpp Scanning dependencies of target test_extension_package_qual Scanning dependencies of target test_sbml_package_qual make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build [ 70%] Scanning dependencies of target test_comp_util Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 70%] Scanning dependencies of target test_comp_extensions make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 70%] Scanning dependencies of target test_comp_sbase make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 71 Scanning dependencies of target test_sbml_extension [ 70%] make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o Scanning dependencies of target test_sbml_conversion cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build [ 71%] make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Scanning dependencies of target test_sbml_package_layout make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningNewFlags.cpp make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o [ 71%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension/test/TestExtensionObjects.cpp [ 71%] Scanning dependencies of target test_sbml_annotation make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build Scanning dependencies of target test_sbml_package_render make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build [ 71%] Building C object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/extension/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/test/TestRunner.c make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 81 make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/test/TestSBMLConverterRegistry.cpp Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml/test/TestReadWriteSBase.cpp [ 72%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/test/utility.cpp [ 72%] make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 72%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/test/TestL3ModelHistory.cpp Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 72%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/test/TestSBasePlugin.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 72%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 72%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/test/TestUnitsConverter.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 72%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/test/TestFbcConsistencyValidator.cpp [ 72%] [ 72%] [ 72%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_qual_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/test/TestFile.cpp Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/test/TestFile.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 72%] [ 72%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/validator/test/TestFile.cpp Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src 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-fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/test/TestFile.cpp Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/validator/test && /usr/bin/c++ 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/test/TestCompConsistencyValidator.cpp Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/validator/test/TestLayoutConsistencyValidator.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 73%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension/test/TestCheckConsistency.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 73%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp Linking CXX executable test_fbc_validator cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/fbc/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fbc_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -o test_fbc_validator -rdynamic ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 Linking CXX executable test_qual_validator cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_qual_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o CMakeFiles/test_qual_validator.dir/TestFile.cpp.o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o -o test_qual_validator -rdynamic ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 Linking CXX executable test_layout_validator cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_layout_validator.dir/link.txt --verbose=1 Linking CXX executable test_comp_validator cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -o test_comp_validator -rdynamic ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o CMakeFiles/test_layout_validator.dir/TestFile.cpp.o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -o test_layout_validator -rdynamic ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 78 [ 74%] Building CXX object 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CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension/test/TestGetAllElements.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 74%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/test/TestRDFAnnotation.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 74%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 74%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp [ 74%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 74 [ 75%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp [ 75%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverter.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator 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/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/test/TestSBMLExtensionNamespaces.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml/test/TestCopyAndClone.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension/test/TestRunner.c [ 75%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension/test/TestRunner.c Linking CXX executable test_comp_extensions cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_extensions.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -o test_comp_extensions -rdynamic ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 Linking CXX executable test_sbml_package_fbc cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/fbc/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_fbc.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -o test_sbml_package_fbc -rdynamic ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/test/TestSBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] Built target test_fbc_validator make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.11.0-Source /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test /builddir/build/BUILD/libSBML-5.11.0-Source/build2 /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake --color= /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c Scanning dependencies of target test_sbml_math make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestChildFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 75 [ 75%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Built target test_qual_validator /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o [ 75%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestReadFromFile2.cpp [ 75%] Built target test_layout_validator /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' [ 75%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.11.0-Source /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.11.0-Source/build2 /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake --color= Built target test_comp_validator /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension/test/TestRunner.c [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp Linking CXX executable test_extension_package_qual cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_qual.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -o test_extension_package_qual -rdynamic ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Scanning dependencies of target test_sbml_sbml [ 75%] make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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-o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/test/TestSBasePluginCreator.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 75%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml 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src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util 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src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 76%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 71 [ 76%] Built target test_comp_extensions make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.11.0-Source /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/units/test /builddir/build/BUILD/libSBML-5.11.0-Source/build2 /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/units/test /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_units make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 76%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator 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/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/units/test/TestUnitFormulaFormatter1.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 76%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 76%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/test/TestSBaseExtensionPoint.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 76%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 76%] Built target test_sbml_package_fbc make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.11.0-Source /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/util/test /builddir/build/BUILD/libSBML-5.11.0-Source/build2 /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/util/test /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake --color= Scanning dependencies of target test_sbml_util make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 76%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestList.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_util.dir/TestList.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/util/test/TestList.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 72 [ 77%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 77%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestSBMLParentObject.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 77%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/util/test/TestStringBuffer.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 77%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestSBMLNamespaces.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 74 [ 77%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestMemory.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_util.dir/TestMemory.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/util/test/TestMemory.c [ 77%] Built target test_extension_package_qual make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.11.0-Source /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.11.0-Source/build2 /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake --color= /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 77%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/util/test/TestRunner.c Scanning dependencies of target test_sbml_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 77%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/validator/test/.. -o CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/validator/test/TestConsistencyValidator.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 77%] [ 77%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/test/TestSBMLExtensionRegistry.cpp Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c [ 78%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml 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/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/test/TestRDFAnnotationMetaid.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 77 [ 79%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 79%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common 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CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml/test/TestRunner.c Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/test/TestRDFAnnotationC.c Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml/test/TestRunner.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 80%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/validator/test/.. -o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/validator/test/TestValidator.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 80%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 80%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 80%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/test/TestUnitsConverterL2.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 80%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp [ 80%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningUnknownPackageRefs.cpp [ 80%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestAncestor.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 80%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/units/test/TestDerivedUnitDefinitions.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 80%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestPort.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_sbase.dir/TestPort.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 80%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o [ 80%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/test/TestModelHistory.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o [ 80%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/extension/test/TestSBMLExtension.cpp Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/test/TestConversionOption.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 80%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestWriteMathMLFromAST.cpp [ 80%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/test/TestModelCreator_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 82 [ 82%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 82%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/conversion/test/TestUnitsConverter2.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 82%] [ 82%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/annotation/test/TestRunner.c Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/units/test/TestUnitFormulaFormatter3.cpp [ 82%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util/test/TestExternalModelResolving.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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-o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/units/test/TestUtilsUnitDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 78 [ 83%] Built target test_sbml_extension /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 83%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing 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-o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/units/test/TestFormulaUnitsData.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 73 [ 84%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src 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85%] [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestRequiredAttributes.cpp Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 85%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.11.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/xml/test/.. -o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/xml/test/TestXMLOutputStream.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 85%] [ 85%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.11.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/xml/test/.. -o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/xml/test/TestXMLNamespaces.c Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.11.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/xml/test/.. -o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/xml/test/TestXMLNode_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 85%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 85%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 85%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 85%] [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestWriteSBML.cpp Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 88 Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common 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&& /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util 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-DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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/usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util 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'/builddir/build/BUILD/libSBML-5.11.0-Source/build2' CMakeFiles/Makefile2:2309: recipe for target 'src/bindings/python/CMakeFiles/binding_python_swig.dir/all' failed /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles make[1]: *** [src/bindings/python/CMakeFiles/binding_python_swig.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestSBMLTransforms.cpp [ 86%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestInternalConsistencyChecks.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 86%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 88%] [ 88%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestCopyAndClone.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestReadFromFile9.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 88%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -o CMakeFiles/test_comp_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util/test/TestRunner.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 85 [ 89%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestWriteL3SBML.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestSBase.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 89 [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestRemoveFromParent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 77 [ 90%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Built target test_sbml_conversion /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestReadFromFile8.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestReadFromFile1.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 97 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 99 100 [ 90%] [ 90%] Built target test_sbml_units Built target test_sbml_xml /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] [ 90%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestRequiredElements.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestGetMultipleObjects.cpp [ 90%] [ 90%] [ 90%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestWriteMathML.cpp Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestReadFromFile5.cpp Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestSBMLValidators.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestReadFromFile7.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestL3FormulaParser.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestCompartmentVolumeRule.c Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestUnit.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 90 [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestDelay.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 91%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestReadMathML.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 91%] [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestEventAssignment_newSetters.c Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestL3Event.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestKineticLaw_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestReaction.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestEvent.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestRule.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestModifierSpeciesReference.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 91%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 91 Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestReadFromFile4.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestSBMLConvertStrict.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 92%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestConstraint.c Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestL3Parameter.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestKineticLaw.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestL3LocalParameter.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension 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src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestModel.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestModel.c Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 86 [ 93%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 93%] [ 93%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRenderReading.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 93%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestValidASTNode.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 92 [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestL3Trigger.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension 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src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestUnit_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 94%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestUnitKind.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 94%] Building 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestEvent_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 94%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 80 [ 95%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestRunner.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestL3Species.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 95%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestL3FormulaFormatter.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestSpecies_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 95%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestASTNode.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestASTNode.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 95%] [ 95%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestUnitDefinition.c cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/math/test/TestFormulaParser.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 93 [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestStoichiometryMath.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 96%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestPriority.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 96%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml 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/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestParameterRule.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 96%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestCompartmentType_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestReadFromFile3.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 96%] [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestCompartment.c Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestListOf.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 94 [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestL3SpeciesReference.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestRunner.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 97%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o [ 97%] cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestL3KineticLaw.c [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestSpeciesType.c Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestSpeciesType_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 97%] [ 97%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestRule_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 97%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestTrigger.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src 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Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator 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--param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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-o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 98%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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-o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestReadFromFile2.c cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestSyntaxChecker.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestInitialAssignment.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestAlgebraicRule.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 98%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestModel_newSetters.c Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp Linking CXX executable test_comp_util cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/comp/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_util.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o CMakeFiles/test_comp_util.dir/TestRunner.c.o -o test_comp_util -rdynamic ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 98%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension 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src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common 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-DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 98%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml 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CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 96 [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator 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cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/util -I/usr/include/minizip -I/usr/include/libxml2 -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -c /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/test/TestEventAssignment.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles [ 99%] Linking CXX executable test_sbml_math cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/math/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_math.dir/link.txt --verbose=1 Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src/sbml -I/builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/src -I/builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml 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CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o 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cmake_link_script CMakeFiles/test_sbml_package_layout.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -o test_sbml_package_layout -rdynamic ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 81 82 83 [100%] Built target test_sbml_package_layout In file included from /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:77:0: /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp: In function 'void test_RenderWriting_write_L3_model_1(int)': /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:3154:13: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without START_TEST (test_RenderWriting_write_L3_model_1) ^ /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp: In function 'void test_RenderWriting_write_model_1(int)': /builddir/build/BUILD/libSBML-5.11.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:138:13: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without START_TEST (test_RenderWriting_write_model_1) ^ Linking CXX executable test_sbml_package_render cd /builddir/build/BUILD/libSBML-5.11.0-Source/build2/src/sbml/packages/render/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_render.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -o test_sbml_package_render -rdynamic ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/libSBML-5.11.0-Source/build2/CMakeFiles 85 86 87 [100%] Built target test_sbml_package_render make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.11.0-Source/build2' Makefile:149: recipe for target 'all' failed make: *** [all] Error 2 RPM build errors: error: Bad exit status from /var/tmp/rpm-tmp.awOoRv (%build) Bad exit status from /var/tmp/rpm-tmp.awOoRv (%build) Child return code was: 1 EXCEPTION: Command failed. See logs for output. # bash --login -c /usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec Traceback (most recent call last): File "/usr/lib/python2.7/site-packages/mockbuild/trace_decorator.py", line 84, in trace result = func(*args, **kw) File "/usr/lib/python2.7/site-packages/mockbuild/util.py", line 505, in do raise exception.Error("Command failed. See logs for output.\n # %s" % (command,), child.returncode) Error: Command failed. See logs for output. # bash --login -c /usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec LEAVE do --> EXCEPTION RAISED